Jmol


Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns the 3D explanation of the molecule that may be used as a teaching tool, or for research e.g., in chemistry together with biochemistry. It is total in the programming Linguistic communication Java, so it can run on the operating systems Windows, macOS, Linux, together with Unix, whether Java is installed. this is the free and open-source software released under a GNU Lesser General Public License LGPL description 2.0. A standalone application and a software coding kit SDK cost that can be integrated into other Java applications, such as Bioclipse and Taverna.

A popular feature is an applet that can be integrated into web pages to display molecules in a manner of ways. For example, molecules can be displayed as ball-and-stick models, space-filling models, ribbon diagrams, etc. Jmol maintains a wide range of chemical file formats, including Protein Data Bank pdb, Crystallographic Information File cif, MDL Molfile mol, and Chemical Markup Language CML. There is also a JavaScript-only HTML5 version, JSmol, that can be used on computers with no Java.

The Jmol applet, among other abilities, ensures an pick to the Chime plug-in, which is no longer under active development. While Jmol has many atttributes that Chime lacks, it does non claim to reproduce all Chime functions, near notably, the Sculpt mode. Chime requires plug-in installation and Internet Explorer 6.0 or Firefox 2.0 on Microsoft Windows, or Netscape Communicator 4.8 on Mac OS 9. Jmol requires Java installation and operates on a wide shape of platforms. For example, Jmol is fully functional in Mozilla Firefox, Internet Explorer, Opera, Google Chrome, and Safari.

Screenshots


Crystal an arrangement of parts or elements in a specific develope figure or combination. of an H/ACA box RNP from Pyrococcus furiosus.

Highlighting two salt bridges in hemoglobin tetramer hemo institution as sticks at bottom-right.

A fragment of transcription component TFIIIA forming three consecutive zinc finger motifs, bound to a stretch of DNA.

Eubacterial 70S Ribosome from Thermus thermophilus.